Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7587

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621173 to 621587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621699 to 623748 15955 mRNA_7588: 15956 - Hypothetical Protein, at 623955 to 629387 15956

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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620,731 - 15953 mRNA_7585 0.84 0.4
620,911 - 0.5
620,932 - 0.2
620,933 - 1.5
620,992 + 3.1
621,040 + 0.8
621,331 + 15954 mRNA_7586 0.38 -0.4
621,350 - 15954 mRNA_7586 0.43 1.9
621,517 + 15954 mRNA_7586 0.83 -0.4
621,596 - 1.2
621,600 - -2.3
621,605 + -0.1
621,639 - -0.0
621,640 + 0.4
621,772 - 0.6
621,774 + 0.2
621,788 - -0.4
621,789 + 0.0
621,796 - 1.9
621,960 + 15955 mRNA_7587 0.13 0.9
622,089 + 15955 mRNA_7587 0.19 0.6
622,097 + 15955 mRNA_7587 0.19 1.0
622,097 + 15955 mRNA_7587 0.19 -0.2
622,943 - 15955 mRNA_7587 0.61 -1.3
622,995 - 15955 mRNA_7587 0.63 -0.1
623,063 + 15955 mRNA_7587 0.67 0.9
623,379 + 15955 mRNA_7587 0.82 0.6
623,576 + 0.3
623,878 - 0.3
623,894 + -1.4
624,632 - 15956 mRNA_7588 0.12 2.3