Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7585

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617839 to 618826 15952 mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621173 to 621587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621699 to 623748 15955

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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618,089 - 15952 mRNA_7584 0.25 -0.2
618,239 - 15952 mRNA_7584 0.40 0.7
618,689 - 15952 mRNA_7584 0.86 -1.1
618,698 + 15952 mRNA_7584 0.87 2.5
618,814 + 0.4
618,825 + 0.2
618,843 - -0.4
618,960 - 0.3
618,969 - 1.8
618,971 - 0.3
618,974 + 0.2
619,683 - 15953 mRNA_7585 0.33 1.1
619,717 - 15953 mRNA_7585 0.34 1.6
619,718 - 15953 mRNA_7585 0.34 -0.7
619,913 - 15953 mRNA_7585 0.44 0.3
620,297 - 15953 mRNA_7585 0.63 2.6
620,437 - 15953 mRNA_7585 0.70 1.5
620,496 - 15953 mRNA_7585 0.73 1.7
620,731 - 15953 mRNA_7585 0.84 0.4
620,911 - 0.5
620,932 - 0.2
620,933 - 1.5
620,992 + 3.1
621,040 + 0.8
621,331 + 15954 mRNA_7586 0.38 -0.4
621,350 - 15954 mRNA_7586 0.43 1.9
621,517 + 15954 mRNA_7586 0.83 -0.4
621,596 - 1.2
621,600 - -2.3
621,605 + -0.1
621,639 - -0.0
621,640 + 0.4
621,772 - 0.6
621,774 + 0.2
621,788 - -0.4
621,789 + 0.0
621,796 - 1.9
621,960 + 15955 mRNA_7587 0.13 0.9