Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7558

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7558: 15926 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 561272 to 563698 15926 mRNA_7559: 15927 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 563948 to 564897 15927

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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560,379 - -0.0
560,533 + 2.4
560,535 + -0.5
560,621 - 2.6
560,668 + 2.0
560,669 - 0.6
560,674 + -0.5
560,675 - 0.2
560,684 + 1.7
560,687 + -0.4
560,724 - -1.5
560,800 + -1.4
560,806 - 0.7
560,819 - 2.4
560,952 + 0.5
560,952 + -0.5
560,959 - 0.0
561,096 - 1.3
561,102 - 0.3
561,155 + 2.1
561,216 + -0.5
561,257 + 0.8
561,269 - 3.1
561,271 - 1.8
561,661 - 15926 mRNA_7558 0.16 -1.0
561,838 + 15926 mRNA_7558 0.23 0.3
562,418 + 15926 mRNA_7558 0.47 0.3
562,448 + 15926 mRNA_7558 0.48 1.1
562,570 - 15926 mRNA_7558 0.53 -0.1
562,575 - 15926 mRNA_7558 0.54 1.0
562,577 + 15926 mRNA_7558 0.54 0.9
563,313 - 15926 mRNA_7558 0.84 0.1
563,452 - 15926 mRNA_7558 0.90 0.2
563,585 + -1.1
563,597 + 0.1
563,607 + 0.8
563,609 + 2.5
563,611 + 0.8
563,638 - -1.3
563,723 - 0.5
563,743 + -0.6
563,744 + 1.0
563,747 - 0.8
563,766 + 0.1
563,767 + 0.4
563,770 + -1.3
563,872 + -0.3
564,056 + 15927 mRNA_7559 0.11 -1.2
564,184 - 15927 mRNA_7559 0.25 0.8
564,192 - 15927 mRNA_7559 0.26 0.4
564,194 + 15927 mRNA_7559 0.26 1.4
564,211 + 15927 mRNA_7559 0.28 -0.0
564,219 - 15927 mRNA_7559 0.29 -1.4
564,333 + 15927 mRNA_7559 0.41 -0.7
564,484 + 15927 mRNA_7559 0.56 0.3
564,636 - 15927 mRNA_7559 0.72 0.1
564,667 + 15927 mRNA_7559 0.76 -0.3