Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7551

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541914 to 542318 15918 mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542848 to 546528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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542,784 - 0.0
542,795 - 0.3
542,799 + 1.3
542,930 - 0.2
542,947 + 0.5
542,950 + 0.0
542,958 - 0.7
543,214 + 0.5
543,217 - 15919 mRNA_7551 0.10 0.6
543,248 - 15919 mRNA_7551 0.11 0.1
543,392 - 15919 mRNA_7551 0.15 2.0
543,409 - 15919 mRNA_7551 0.15 0.5
543,688 + 15919 mRNA_7551 0.23 1.5
543,959 + 15919 mRNA_7551 0.30 -0.0
543,960 - 15919 mRNA_7551 0.30 0.4
543,981 - 15919 mRNA_7551 0.31 -0.6
543,997 + 15919 mRNA_7551 0.31 3.4
544,132 - 15919 mRNA_7551 0.35 2.3
544,133 + 15919 mRNA_7551 0.35 -0.8
544,145 + 15919 mRNA_7551 0.35 1.3
544,259 - 15919 mRNA_7551 0.38 1.1
545,303 + 15919 mRNA_7551 0.67 0.2
546,002 - 15919 mRNA_7551 0.86 1.8
546,120 - 15919 mRNA_7551 0.89 2.0
546,135 - 15919 mRNA_7551 0.89 -0.7
546,148 + 15919 mRNA_7551 0.90 2.4
546,238 + -0.0
546,282 + 1.5
546,741 + 1.1
546,868 - 0.4
546,877 - 15920 mRNA_7552 0.10 0.2
547,464 - -1.5