Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7541

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522757 to 524526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524745 to 525930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526059 to 527753 15910

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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524,570 - 0.7
524,574 - 0.3
524,705 - 1.6
524,717 - -1.3
524,720 + -0.2
524,720 + 0.7
524,734 + -1.0
524,742 - 1.4
524,744 - -0.3
524,749 + 0.6
524,751 + 1.0
524,752 + 0.8
524,752 + 1.2
524,858 - -0.3
524,858 - 0.7
524,860 + 2.4
524,860 + -2.5
524,861 + 0.7
524,861 + 0.8
524,861 + 0.1
524,861 + 1.0
524,861 + 0.0
524,861 + 2.3
524,861 + 1.0
524,861 + 0.6
524,861 + 2.4
524,861 + 0.1
524,862 + -0.1
524,862 - 1.2
524,864 + 15909 mRNA_7541 0.10 0.7
524,864 - 15909 mRNA_7541 0.10 -0.1
524,864 - 15909 mRNA_7541 0.10 1.5
524,864 - 15909 mRNA_7541 0.10 0.9
524,864 - 15909 mRNA_7541 0.10 0.7
524,864 - 15909 mRNA_7541 0.10 0.1
524,864 - 15909 mRNA_7541 0.10 0.3
524,867 + 15909 mRNA_7541 0.10 1.5
524,867 + 15909 mRNA_7541 0.10 0.1
524,879 - 15909 mRNA_7541 0.11 0.4
524,894 + 15909 mRNA_7541 0.13 -0.1
524,984 - 15909 mRNA_7541 0.20 -0.3
525,034 - 15909 mRNA_7541 0.24 0.4
525,039 + 15909 mRNA_7541 0.25 0.5
525,044 + 15909 mRNA_7541 0.25 0.2
525,118 + 15909 mRNA_7541 0.31 -0.0
525,147 + 15909 mRNA_7541 0.34 0.2
525,173 - 15909 mRNA_7541 0.36 -1.2
525,181 - 15909 mRNA_7541 0.37 1.3
525,186 - 15909 mRNA_7541 0.37 -0.8
525,225 + 15909 mRNA_7541 0.40 2.2
525,230 + 15909 mRNA_7541 0.41 0.2
525,266 - 15909 mRNA_7541 0.44 0.8
525,290 + 15909 mRNA_7541 0.46 -0.8
525,510 - 15909 mRNA_7541 0.65 0.7
525,584 - 15909 mRNA_7541 0.71 0.1
525,614 - 15909 mRNA_7541 0.73 -0.4
525,654 - 15909 mRNA_7541 0.77 0.8
525,670 + 15909 mRNA_7541 0.78 0.5
525,779 - 15909 mRNA_7541 0.87 -0.1
525,854 - 0.2
525,929 - 0.4
526,365 - 15910 mRNA_7542 0.18 0.5
526,381 - 15910 mRNA_7542 0.19 2.4
526,812 + 15910 mRNA_7542 0.44 0.7