Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7539

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519946 to 522544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522757 to 524526 15908

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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518,947 + 0.2
518,959 - -0.8
518,977 + 2.6
519,067 + 0.2
519,115 + 0.5
519,121 - 0.3
519,125 + 0.6
519,142 + -0.0
519,146 - 0.6
519,157 + 1.6
519,162 + 0.4
519,189 - 0.1
519,199 - -1.0
519,226 - -0.3
519,244 - 1.0
519,265 + 0.4
519,373 - 0.7
519,386 - -1.4
519,515 - -0.5
519,530 - 1.5
519,542 + 2.1
519,550 - -0.1
519,552 - 0.4
519,554 + 0.6
519,692 - 0.6
520,117 - 1.9
520,573 + 15907 mRNA_7539 0.24 3.2
521,159 - 15907 mRNA_7539 0.47 1.9
521,404 - 15907 mRNA_7539 0.56 1.5
521,446 + 15907 mRNA_7539 0.58 0.3
521,453 + 15907 mRNA_7539 0.58 2.8
521,827 - 15907 mRNA_7539 0.72 0.2
522,156 + 15907 mRNA_7539 0.85 0.8
522,287 + 0.1
522,303 - -0.1
522,387 - 1.9
522,402 - 2.4
522,451 - 0.2
522,484 + 2.3
522,623 - 0.3
522,625 + 1.9
522,627 + 0.5
522,628 + -0.7
522,630 - 0.4
522,633 + -0.8
522,646 + 1.3
522,653 - 1.3
522,659 + -0.0
522,671 + -0.1
522,682 - 3.7
522,786 - 0.5
522,811 - -0.7