Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7524

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495321 to 495867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495978 to 498115 15894

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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492,904 + 15891 mRNA_7523 0.68 0.3
492,919 + 15891 mRNA_7523 0.69 0.3
492,921 + 15891 mRNA_7523 0.69 -1.4
493,059 + 15891 mRNA_7523 0.80 1.2
493,066 + 15891 mRNA_7523 0.81 0.3
493,344 - 1.4
493,349 - 2.4
493,361 + 0.7
493,383 - 0.7
493,498 + 0.4
493,524 - 2.5
493,526 + 0.0
493,540 - 0.8
493,656 + -0.9
493,823 - 15892 mRNA_7524 0.17 -0.2
493,933 + 15892 mRNA_7524 0.23 2.3
493,985 - 15892 mRNA_7524 0.26 0.6
495,157 - 1.6
495,613 - 15893 mRNA_7525 0.53 0.5
495,637 + 15893 mRNA_7525 0.58 -0.7
495,738 + 15893 mRNA_7525 0.76 0.5
495,756 + 15893 mRNA_7525 0.80 0.2
495,765 + 15893 mRNA_7525 0.81 2.6
495,890 + 1.8
495,893 + 0.2
495,896 + 0.1
495,897 + 0.6
495,914 - 2.6
495,929 - 0.2
495,935 - 2.0
495,945 - -1.2
495,946 - 0.3
495,951 - 0.1
496,056 - 0.8
496,075 + -1.4
496,091 + -3.1