Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7522

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490428 to 491714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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489,444 - 2.4
489,447 + 1.8
489,478 - 2.6
489,527 + -0.1
489,532 + 0.5
489,547 - 0.2
489,570 + 0.4
489,570 + 1.0
489,590 - -0.5
489,602 + -0.1
489,615 - 1.2
489,615 - -0.1
489,617 + -0.8
489,618 + 0.5
489,619 + 0.2
489,622 - -1.3
489,625 - 0.2
489,626 - 0.5
489,630 - 0.7
489,631 - 0.1
489,640 - 0.7
489,641 + 0.8
489,642 + -0.1
489,646 + 0.5
489,647 + -1.2
489,653 - -0.4
489,653 - 0.4
489,654 + -0.3
489,660 + 0.7
489,663 + 1.9
489,664 + 0.4
489,664 + 0.7
489,665 - 2.6
489,665 - 0.0
489,666 - 2.8
489,668 - -0.2
489,670 - 0.2
489,673 + -0.5
489,684 + -0.8
489,686 + 1.1
489,805 + 1.6
489,805 - 0.8
489,807 - 0.6
489,808 + -1.7
489,825 - 0.1
489,833 - 2.8
489,836 - -0.1
489,847 - 1.5
489,851 + -0.0
489,936 - -0.3
489,965 - -0.2
489,975 - -0.0
489,985 - 0.1
489,985 + 0.7
489,992 + -0.8
490,001 + 0.1
490,038 + 0.0
490,086 - 0.2
490,104 + -0.1
490,104 + 1.8
490,107 - 3.6
490,113 + 1.0
490,117 - -1.2
490,124 + 0.5
490,128 + 1.9
490,132 + 0.1
490,132 - 1.1
490,140 + 0.0
490,145 - 0.7
490,146 + 2.2
490,152 - -0.1
490,169 + 0.1
490,172 + -1.1
490,180 - 0.7
490,190 - 1.4
490,193 + 0.1
490,207 + 0.5
490,419 - 2.2
490,476 + 0.4
490,503 - -3.1
490,622 - 15890 mRNA_7522 0.15 1.7
490,740 - 15890 mRNA_7522 0.24 0.5
490,750 + 15890 mRNA_7522 0.25 -0.5
490,751 - 15890 mRNA_7522 0.25 0.0
490,771 - 15890 mRNA_7522 0.27 0.4
490,778 + 15890 mRNA_7522 0.27 0.5
491,085 - 15890 mRNA_7522 0.51 2.0
491,425 - 15890 mRNA_7522 0.77 2.0
491,543 - 15890 mRNA_7522 0.87 -0.1
491,573 + 15890 mRNA_7522 0.89 1.7
491,646 - 0.6
491,647 + -0.3
491,760 - 0.8
491,849 - 1.9
491,986 + 0.3
492,005 - 0.0
492,044 + 0.1
492,053 + 0.9
492,063 + 0.1
492,303 - 15891 mRNA_7523 0.18 -1.1
492,418 + 15891 mRNA_7523 0.28 0.5
492,452 - 15891 mRNA_7523 0.31 -0.2