Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7516

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473987 to 475256 15883 mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475785 to 476732 15884 mRNA_7517: 15885 - Hypothetical Protein, at 476971 to 478237 15885

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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474,788 + 15883 mRNA_7515 0.63 2.7
474,789 - 15883 mRNA_7515 0.63 1.6
474,796 + 15883 mRNA_7515 0.64 1.5
474,796 + 15883 mRNA_7515 0.64 1.1
474,798 + 15883 mRNA_7515 0.64 0.2
474,804 + 15883 mRNA_7515 0.64 1.3
474,818 - 15883 mRNA_7515 0.65 1.1
474,833 + 15883 mRNA_7515 0.67 0.6
474,833 - 15883 mRNA_7515 0.67 0.5
474,844 - 15883 mRNA_7515 0.67 2.7
474,849 + 15883 mRNA_7515 0.68 0.4
474,862 - 15883 mRNA_7515 0.69 1.9
474,872 - 15883 mRNA_7515 0.70 -0.4
474,876 - 15883 mRNA_7515 0.70 -1.7
474,897 - 15883 mRNA_7515 0.72 0.8
474,903 + 15883 mRNA_7515 0.72 -0.0
474,905 + 15883 mRNA_7515 0.72 1.2
474,927 + 15883 mRNA_7515 0.74 0.4
474,928 + 15883 mRNA_7515 0.74 -0.2
474,937 - 15883 mRNA_7515 0.75 0.1
474,949 - 15883 mRNA_7515 0.76 1.3
474,981 + 15883 mRNA_7515 0.78 0.1
475,001 - 15883 mRNA_7515 0.80 0.2
475,009 - 15883 mRNA_7515 0.80 0.7
475,027 + 15883 mRNA_7515 0.82 0.1
475,033 - 15883 mRNA_7515 0.82 0.6
475,043 + 15883 mRNA_7515 0.83 -2.8
475,063 - 15883 mRNA_7515 0.85 0.4
475,064 + 15883 mRNA_7515 0.85 -0.0
475,066 + 15883 mRNA_7515 0.85 0.4
475,225 - 0.4
475,314 + -0.8
475,317 - 1.2
475,330 - 0.4
475,336 + 0.8
475,338 + -0.1
475,340 + 0.1
475,365 - -0.6
475,490 - 0.2
475,494 - 1.3
475,513 + 0.2
475,549 + 3.2
475,647 - 0.7
475,651 - 1.6
475,664 - 0.7
475,672 - 1.4
475,682 - 0.4
475,686 + -0.2
475,820 - -0.3
475,959 - 15884 mRNA_7516 0.18 0.0
476,631 - 15884 mRNA_7516 0.89 -0.2
476,649 - 1.6
476,740 - -1.7
476,767 + 1.5
476,796 + 0.7
476,855 - 1.0
476,855 - 0.1
476,859 - -1.0
476,863 + -1.2
476,894 + 4.0
476,977 - -0.1
476,986 - 2.2
476,999 - 1.4
477,028 + 0.0
477,036 + 2.2
477,117 - 15885 mRNA_7517 0.12 -0.7
477,125 + 15885 mRNA_7517 0.12 4.6
477,136 - 15885 mRNA_7517 0.13 0.2
477,140 - 15885 mRNA_7517 0.13 0.7
477,141 - 15885 mRNA_7517 0.13 0.5
477,141 - 15885 mRNA_7517 0.13 0.6
477,149 + 15885 mRNA_7517 0.14 0.7
477,152 - 15885 mRNA_7517 0.14 -0.0
477,156 - 15885 mRNA_7517 0.15 0.4
477,158 - 15885 mRNA_7517 0.15 0.4
477,167 + 15885 mRNA_7517 0.15 0.4
477,171 - 15885 mRNA_7517 0.16 1.8
477,189 + 15885 mRNA_7517 0.17 0.4
477,210 + 15885 mRNA_7517 0.19 0.6
477,216 - 15885 mRNA_7517 0.19 -0.8
477,367 + 15885 mRNA_7517 0.31 -0.1
477,471 - 15885 mRNA_7517 0.39 1.1