Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7492

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413900 to 421307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421579 to 423387 15861

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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412,916 - 0.3
412,937 + -1.3
413,041 - 0.6
413,207 + 0.1
413,319 - 1.2
413,353 - -0.3
413,370 + 0.6
413,651 - 0.1
413,785 - 3.6
413,901 + -1.2
413,909 + 0.4
413,978 + 1.5
414,526 + 1.5
414,813 - 15860 mRNA_7492 0.12 0.2
415,379 - 15860 mRNA_7492 0.20 -1.2
415,389 - 15860 mRNA_7492 0.20 -0.6
415,726 + 15860 mRNA_7492 0.25 -0.6
416,125 + 15860 mRNA_7492 0.30 0.6
416,394 - 15860 mRNA_7492 0.34 0.8
416,687 + 15860 mRNA_7492 0.38 0.3
416,868 + 15860 mRNA_7492 0.40 -0.7
416,887 - 15860 mRNA_7492 0.40 2.1
417,729 - 15860 mRNA_7492 0.52 0.2
417,873 - 15860 mRNA_7492 0.54 -0.0
418,404 + 15860 mRNA_7492 0.61 -0.7
419,005 + 15860 mRNA_7492 0.69 0.4
419,186 + 15860 mRNA_7492 0.71 1.9
419,457 + 15860 mRNA_7492 0.75 -0.3
419,469 + 15860 mRNA_7492 0.75 -1.8
419,484 + 15860 mRNA_7492 0.75 1.8
419,958 - 15860 mRNA_7492 0.82 -0.6
420,014 - 15860 mRNA_7492 0.83 -1.5
420,053 - 15860 mRNA_7492 0.83 -0.2
420,093 - 15860 mRNA_7492 0.84 1.1
420,648 - 2.9
420,869 + -0.7
420,939 - 0.5
420,957 - -1.9
421,093 - -1.0
421,120 - 2.8
421,253 + -0.5
421,408 - 1.4
421,665 - -1.5
421,666 - 0.1
421,677 - 2.2
421,678 - -0.2
421,681 - 0.1
421,689 - 1.5
421,690 + -0.4
421,692 - -1.6
421,694 + 0.5
421,697 + 1.1
421,842 + 15861 mRNA_7493 0.15 0.5
421,969 - 15861 mRNA_7493 0.22 0.1
421,970 - 15861 mRNA_7493 0.22 1.8
421,976 + 15861 mRNA_7493 0.22 -0.8
421,988 - 15861 mRNA_7493 0.23 0.8
422,126 + 15861 mRNA_7493 0.30 1.0
422,272 + 15861 mRNA_7493 0.38 3.3
422,307 + 15861 mRNA_7493 0.40 -0.3