Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7484

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7484: 15852 - K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D), at 392851 to 393989 15852 mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394901 to 397101 15853

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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391,865 - -2.6
392,052 + -0.5
392,080 - 1.1
392,182 - 0.6
392,193 - 2.0
392,209 - -2.2
392,356 + -0.7
392,604 + 0.7
392,639 - 0.5
392,781 + -1.1
392,912 + -0.9
393,246 - 15852 mRNA_7484 0.35 -0.5
393,660 - 15852 mRNA_7484 0.71 -1.0
393,660 - 15852 mRNA_7484 0.71 -0.1
393,690 - 15852 mRNA_7484 0.74 0.8
393,812 + 15852 mRNA_7484 0.84 1.4
393,815 + 15852 mRNA_7484 0.85 0.9
393,828 + 15852 mRNA_7484 0.86 0.9
393,833 + 15852 mRNA_7484 0.86 0.6
393,966 - 1.6
393,982 + -1.3
393,983 - 0.5
393,984 + 1.1
393,988 + 0.4
394,000 + 1.2
394,114 - 2.0
394,116 - -0.4
394,134 + -0.6
394,139 + 0.7
394,154 + 0.1
394,262 - 1.2
394,264 - -0.1
394,283 - 0.3
394,285 - -1.0
394,299 - 1.4
394,302 - -0.1
394,306 + 1.4
394,310 + 0.1
394,313 + -0.5
394,324 + 0.3
394,435 + 3.0
394,473 + -1.8
394,598 + -0.7
394,602 + 1.0
394,620 + 0.4
394,891 + -0.2
394,898 + -0.1