Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7463

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334859 to 336377 15830 mRNA_7463: 15831 - Hypothetical Protein, at 337178 to 338673 15831 mRNA_7464: 15832 - BLAST expressed protein [Schizophyllum commune H4-8], at 339268 to 340751 15832

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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336,241 - -0.8
336,506 - -0.4
336,523 + 0.9
336,972 - 2.0
336,978 - -0.3
336,982 + 1.7
336,983 + 0.5
336,994 + 1.6
336,994 + 1.2
336,994 + -0.5
337,004 - -0.1
337,007 + 1.5
337,011 + 0.1
337,020 + 0.6
337,048 + 1.4
337,151 - -0.1
337,230 + -0.5
337,703 + 15831 mRNA_7463 0.35 2.4
337,933 + 15831 mRNA_7463 0.50 2.9
338,003 - 15831 mRNA_7463 0.55 -1.3
338,202 + 15831 mRNA_7463 0.68 -0.2
338,239 - 15831 mRNA_7463 0.71 1.0
338,305 + 15831 mRNA_7463 0.75 0.3
338,470 + 15831 mRNA_7463 0.86 1.6
338,738 + -1.2
338,859 + -1.5
338,873 + -0.1
338,925 + -0.5
339,035 - -0.1
339,038 - -0.9
339,174 + 0.3
339,180 - -1.4
339,200 - 1.3
339,331 - -0.9
339,338 + 1.1
339,367 - 1.5
339,482 - 15832 mRNA_7464 0.14 -0.9
339,527 + 15832 mRNA_7464 0.17 0.4
339,529 + 15832 mRNA_7464 0.18 0.3
339,673 - 15832 mRNA_7464 0.27 2.0