Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7430

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256122 to 258039 15798 mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258369 to 261553 15799

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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255,443 + -1.6
255,528 - 0.3
255,532 + 1.9
255,564 - -0.4
255,570 + 0.8
255,571 - 0.5
255,574 + -0.2
255,574 + 3.7
255,586 + 0.4
255,704 - 0.8
255,723 - 0.6
255,884 + 1.1
255,892 - 1.1
255,992 - 0.7
256,033 - -0.9
256,044 + 0.7
256,047 - 0.6
256,178 + 1.6
256,587 - 15798 mRNA_7430 0.24 -0.3
256,600 + 15798 mRNA_7430 0.25 1.1
256,722 + 15798 mRNA_7430 0.31 0.7
257,145 + 15798 mRNA_7430 0.53 2.0
257,299 - 15798 mRNA_7430 0.61 0.5
257,328 + 15798 mRNA_7430 0.63 1.0
257,594 + 15798 mRNA_7430 0.77 1.2
257,756 + 15798 mRNA_7430 0.85 0.5
258,072 + 1.8
258,183 - 2.7
258,490 - -2.1