Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7429

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251137 to 252658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797 mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256122 to 258039 15798

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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252,155 - 15796 mRNA_7428 0.67 -0.5
252,169 + 15796 mRNA_7428 0.68 -0.0
252,622 + 0.4
252,895 + 0.2
253,018 - 15797 mRNA_7429 0.11 -1.3
253,050 - 15797 mRNA_7429 0.12 0.4
253,513 - 15797 mRNA_7429 0.29 2.9
253,707 - 15797 mRNA_7429 0.36 0.8
254,227 - 15797 mRNA_7429 0.55 1.0
254,475 + 15797 mRNA_7429 0.64 0.4
255,086 + 15797 mRNA_7429 0.86 0.3
255,443 + -1.6
255,528 - 0.3
255,532 + 1.9
255,564 - -0.4
255,570 + 0.8
255,571 - 0.5
255,574 + -0.2
255,574 + 3.7
255,586 + 0.4
255,704 - 0.8
255,723 - 0.6
255,884 + 1.1
255,892 - 1.1
255,992 - 0.7
256,033 - -0.9
256,044 + 0.7
256,047 - 0.6
256,178 + 1.6