Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7428

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251137 to 252658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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250,193 + -0.2
250,239 - 0.5
250,361 + -2.8
250,414 + -0.9
250,504 - 0.1
250,528 - -0.8
250,587 + -0.4
250,694 + 0.7
250,710 + 0.1
250,745 - -1.2
250,782 + -0.1
250,806 - 4.0
250,838 + -1.4
250,838 - -1.5
250,854 + -1.9
250,957 - -0.3
250,958 - 0.4
250,963 + 0.0
250,964 + 0.6
250,973 + -1.1
250,983 + 0.6
251,103 + 0.1
251,291 - 15796 mRNA_7428 0.10 1.2
252,155 - 15796 mRNA_7428 0.67 -0.5
252,169 + 15796 mRNA_7428 0.68 -0.0
252,622 + 0.4
252,895 + 0.2
253,018 - 15797 mRNA_7429 0.11 -1.3
253,050 - 15797 mRNA_7429 0.12 0.4
253,513 - 15797 mRNA_7429 0.29 2.9