Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7402

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190009 to 193201 15769 mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193334 to 195902 15770 mRNA_7403: 15771 - Hypothetical Protein, at 196624 to 197387 15771

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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192,697 - 15769 mRNA_7401 0.84 -0.3
192,767 - 15769 mRNA_7401 0.86 -0.1
193,315 - 0.9
193,326 + 2.0
193,330 + -0.2
193,442 + -0.9
193,450 - -0.8
193,468 + -0.5
193,636 + 15770 mRNA_7402 0.12 -0.2
194,169 - 15770 mRNA_7402 0.33 -0.4
194,614 - 15770 mRNA_7402 0.50 -0.7
194,906 - 15770 mRNA_7402 0.61 -0.6
194,913 + 15770 mRNA_7402 0.61 -0.7
194,924 - 15770 mRNA_7402 0.62 -1.1
195,050 - 15770 mRNA_7402 0.67 -0.6
195,078 - 15770 mRNA_7402 0.68 1.9
195,179 + 15770 mRNA_7402 0.72 0.1
195,208 + 15770 mRNA_7402 0.73 1.8
196,095 - -0.1
196,105 + 3.0