Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7397

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179186 to 180946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181138 to 183665 15765 mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184149 to 185888 15766

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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180,415 + 15764 mRNA_7396 0.70 1.5
181,021 - 1.9
181,036 - -1.0
181,040 + 1.0
181,041 - 3.0
181,054 - 3.2
181,055 - -0.0
181,067 + 0.4
181,067 - -0.6
181,075 - -1.1
181,075 - 1.0
181,075 + -0.2
181,075 - 1.3
181,081 + 0.0
181,081 + -1.1
181,209 + -1.2
181,212 - -0.3
181,222 + -0.5
181,245 - 3.6
181,344 - 1.4
181,373 + 0.5
181,377 + 1.2
181,412 + 15765 mRNA_7397 0.11 0.7
181,425 + 15765 mRNA_7397 0.11 -1.1
181,430 + 15765 mRNA_7397 0.12 0.4
181,431 + 15765 mRNA_7397 0.12 -0.0
181,532 - 15765 mRNA_7397 0.16 -0.5
181,537 + 15765 mRNA_7397 0.16 0.5
181,544 + 15765 mRNA_7397 0.16 0.7
182,604 - 15765 mRNA_7397 0.58 0.2
182,733 - 15765 mRNA_7397 0.63 2.1
182,747 + 15765 mRNA_7397 0.64 1.7
182,750 - 15765 mRNA_7397 0.64 1.1
182,874 - 15765 mRNA_7397 0.69 -0.2
183,047 + 15765 mRNA_7397 0.76 1.5
183,142 - 15765 mRNA_7397 0.79 0.3
183,174 - 15765 mRNA_7397 0.81 0.8
183,181 - 15765 mRNA_7397 0.81 0.1
183,301 - 15765 mRNA_7397 0.86 0.2
183,314 - 15765 mRNA_7397 0.86 0.8
183,447 + -1.1
183,742 + -0.6
183,780 + 0.3
183,892 - 0.5
183,901 + -0.3
183,903 - 0.5
183,905 - -0.4
183,907 - 0.9
183,907 - -0.0
183,929 + -0.0
183,940 + -0.1
183,944 - 1.8
183,951 - -0.8
183,959 - -0.4
183,993 + 3.5
183,993 - -0.7
183,995 + 0.4
184,003 - -1.3
184,003 + 1.8
184,007 - -0.1
184,008 + 2.5
184,054 + 0.7
184,066 - 0.6
184,078 + -1.9
184,078 + -1.7
184,189 - 0.9
184,221 - 0.7
184,348 - 15766 mRNA_7398 0.11 -0.2
184,358 + 15766 mRNA_7398 0.12 1.1
184,360 - 15766 mRNA_7398 0.12 0.2
184,569 + 15766 mRNA_7398 0.24 -0.6