Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7396

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177837 to 178751 15763 mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179186 to 180946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181138 to 183665 15765

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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178,204 - 15763 mRNA_7395 0.40 -0.4
178,263 + 15763 mRNA_7395 0.47 1.1
178,401 + 15763 mRNA_7395 0.62 -2.3
178,421 + 15763 mRNA_7395 0.64 -0.2
178,545 + 15763 mRNA_7395 0.77 -1.5
178,672 + -0.7
178,821 - -0.5
178,838 - 2.0
178,840 - 0.6
178,841 + -0.6
178,849 + -0.0
178,919 + -1.0
178,995 + -0.2
179,013 + 2.0
179,139 + -2.5
180,415 + 15764 mRNA_7396 0.70 1.5
181,021 - 1.9
181,036 - -1.0
181,040 + 1.0
181,041 - 3.0
181,054 - 3.2
181,055 - -0.0
181,067 + 0.4
181,067 - -0.6
181,075 - -1.1
181,075 - 1.0
181,075 + -0.2
181,075 - 1.3
181,081 + 0.0
181,081 + -1.1
181,209 + -1.2
181,212 - -0.3
181,222 + -0.5
181,245 - 3.6
181,344 - 1.4
181,373 + 0.5
181,377 + 1.2
181,412 + 15765 mRNA_7397 0.11 0.7
181,425 + 15765 mRNA_7397 0.11 -1.1
181,430 + 15765 mRNA_7397 0.12 0.4
181,431 + 15765 mRNA_7397 0.12 -0.0
181,532 - 15765 mRNA_7397 0.16 -0.5
181,537 + 15765 mRNA_7397 0.16 0.5
181,544 + 15765 mRNA_7397 0.16 0.7