Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7395

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175289 to 177598 15762 mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177837 to 178751 15763 mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179186 to 180946 15764

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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177,069 - 15762 mRNA_7394 0.77 1.4
177,099 + 15762 mRNA_7394 0.78 0.1
177,251 + 15762 mRNA_7394 0.85 -1.5
177,360 + 15762 mRNA_7394 0.90 1.7
177,474 - 0.9
177,488 - -0.5
177,648 - 2.3
177,664 + -1.1
177,665 + 1.5
177,777 - -0.2
177,820 - 0.9
178,204 - 15763 mRNA_7395 0.40 -0.4
178,263 + 15763 mRNA_7395 0.47 1.1
178,401 + 15763 mRNA_7395 0.62 -2.3
178,421 + 15763 mRNA_7395 0.64 -0.2
178,545 + 15763 mRNA_7395 0.77 -1.5
178,672 + -0.7
178,821 - -0.5
178,838 - 2.0
178,840 - 0.6
178,841 + -0.6
178,849 + -0.0
178,919 + -1.0
178,995 + -0.2
179,013 + 2.0
179,139 + -2.5