Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7394

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172471 to 174336 15761 mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175289 to 177598 15762 mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177837 to 178751 15763

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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174,408 - 0.2
174,445 + -2.2
174,446 + -0.5
174,569 - 0.4
174,579 - 1.3
174,582 - 0.6
174,584 - -1.6
174,593 + -0.0
174,597 - 0.2
174,601 + -1.5
174,606 - 0.3
174,618 - -0.9
174,622 + -0.6
174,622 + 1.0
174,634 + 1.6
174,636 + 1.5
174,639 - -1.8
174,652 - 0.2
174,662 - 0.3
174,707 + 2.0
174,713 + -0.4
174,730 - -1.6
174,747 - -0.3
174,749 - 0.2
174,812 + -1.2
174,815 + 0.2
174,826 + -1.5
174,852 + 1.0
174,852 + 0.1
174,853 - -0.1
174,861 - 0.5
174,866 - 1.0
174,877 + -0.4
174,888 - -1.3
174,889 - 0.1
174,893 + -0.9
174,893 - -0.1
174,898 + -0.2
174,907 + 2.1
174,911 - 0.1
174,912 - -0.3
174,912 - 0.9
174,914 + 0.6
174,919 + -0.0
174,927 + 0.7
174,939 + 1.0
174,942 + -0.1
175,026 - 0.1
175,055 + 1.2
175,071 - 0.3
175,077 - 1.5
175,079 - 0.7
175,215 - -0.1
175,222 + 0.4
176,181 - 15762 mRNA_7394 0.39 1.2
176,316 - 15762 mRNA_7394 0.44 0.3
176,329 - 15762 mRNA_7394 0.45 -0.3
176,638 + 15762 mRNA_7394 0.58 2.2
176,772 - 15762 mRNA_7394 0.64 -0.1
176,779 - 15762 mRNA_7394 0.65 -1.0
177,069 - 15762 mRNA_7394 0.77 1.4
177,099 + 15762 mRNA_7394 0.78 0.1
177,251 + 15762 mRNA_7394 0.85 -1.5
177,360 + 15762 mRNA_7394 0.90 1.7
177,474 - 0.9
177,488 - -0.5
177,648 - 2.3
177,664 + -1.1
177,665 + 1.5
177,777 - -0.2
177,820 - 0.9
178,204 - 15763 mRNA_7395 0.40 -0.4
178,263 + 15763 mRNA_7395 0.47 1.1
178,401 + 15763 mRNA_7395 0.62 -2.3
178,421 + 15763 mRNA_7395 0.64 -0.2
178,545 + 15763 mRNA_7395 0.77 -1.5