Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7385

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152913 to 154132 15752 mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154422 to 157963 15753 mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158123 to 159294 15754

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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154,178 + -0.2
154,210 - -0.1
154,217 + -0.8
154,239 + 0.6
154,256 + -0.2
154,344 - 0.4
154,352 + 0.6
154,353 - 0.4
154,358 - 2.8
154,361 + 1.6
154,364 - 1.2
154,371 - -0.8
154,375 + 1.2
154,379 - -0.9
154,382 + -0.2
154,383 + -1.5
154,404 + 0.6
154,411 - -1.4
154,528 - -1.3
154,668 + -2.0
154,814 - 15753 mRNA_7385 0.11 3.7
154,853 - 15753 mRNA_7385 0.12 0.3
155,279 - 15753 mRNA_7385 0.24 0.7
155,419 + 15753 mRNA_7385 0.28 -1.7
156,040 + 15753 mRNA_7385 0.46 -0.5
156,182 - 15753 mRNA_7385 0.50 -1.1
156,367 - 15753 mRNA_7385 0.55 1.2
156,566 + 15753 mRNA_7385 0.61 3.3
157,008 - 15753 mRNA_7385 0.73 0.3
157,199 + 15753 mRNA_7385 0.78 0.3
157,295 - 15753 mRNA_7385 0.81 0.8
157,296 + 15753 mRNA_7385 0.81 0.8
157,487 + 15753 mRNA_7385 0.87 1.3
157,652 + 1.7
157,742 - 2.2
157,862 - 1.7
158,223 - -0.3
158,329 + 15754 mRNA_7386 0.18 -0.8
158,333 - 15754 mRNA_7386 0.18 2.3
158,399 - 15754 mRNA_7386 0.24 1.0
158,492 + 15754 mRNA_7386 0.31 0.6
158,496 - 15754 mRNA_7386 0.32 -1.1
158,508 + 15754 mRNA_7386 0.33 0.8