Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7383

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7382: 15750 - Hypothetical Protein, at 147562 to 148955 15750 mRNA_7383: 15751 - K19355 MAN mannan endo-1,4-beta-mannosidase, at 149650 to 152306 15751 mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152913 to 154132 15752

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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148,784 + 15750 mRNA_7382 0.88 0.1
148,784 + 15750 mRNA_7382 0.88 -1.1
148,808 - 15750 mRNA_7382 0.89 1.0
148,897 - 0.2
148,908 + -0.5
148,909 + 0.8
148,912 - 0.5
148,918 + 0.8
148,919 - 0.0
148,940 + -2.0
148,974 - -0.3
149,004 + 0.9
149,012 - -0.5
149,023 + -0.1
149,031 + -0.8
149,205 + -0.3
149,241 - 1.7
149,248 - -0.1
149,275 + -0.1
149,353 + -0.6
149,359 + -0.0
149,377 + 0.5
149,389 + 0.1
149,546 + 0.1
149,649 - 0.5
149,652 - -0.4
149,652 - -0.4
149,653 + -0.7
149,655 + -0.8
150,020 - 15751 mRNA_7383 0.14 -0.9
150,389 + 15751 mRNA_7383 0.28 0.4
150,540 - 15751 mRNA_7383 0.33 -0.5
150,546 - 15751 mRNA_7383 0.34 2.7
150,831 + 15751 mRNA_7383 0.44 2.6
151,103 + 15751 mRNA_7383 0.55 2.1
151,142 - 15751 mRNA_7383 0.56 0.5
151,362 + 15751 mRNA_7383 0.64 -1.9
151,713 - 15751 mRNA_7383 0.78 -0.3
152,272 - 0.1
152,277 + 1.0
152,289 - -1.0
152,415 + -0.8
152,418 - 1.6
152,422 + 0.4
152,561 + 0.0
152,588 + -0.8
152,595 - 0.3
152,704 + 0.8
152,720 - 0.5
152,723 - 0.0
152,737 - -0.2
152,751 + 1.5
152,870 - -2.4
153,020 + -0.0