Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7368

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106324 to 107108 15735 mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107448 to 110616 15736 mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111155 to 112314 15737

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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106,578 + 15735 mRNA_7367 0.32 -1.3
106,644 - 15735 mRNA_7367 0.41 1.4
106,692 - 15735 mRNA_7367 0.47 -0.1
106,724 + 15735 mRNA_7367 0.51 1.3
106,855 - 15735 mRNA_7367 0.68 -0.6
106,887 - 15735 mRNA_7367 0.72 -0.0
106,892 + 15735 mRNA_7367 0.72 0.5
107,196 + 0.3
107,432 - -0.6
107,440 - 1.7
107,445 - 1.6
107,599 - -0.5
107,759 + 1.4
107,777 - 15736 mRNA_7368 0.10 1.1
108,049 + 15736 mRNA_7368 0.19 0.1
108,310 - 15736 mRNA_7368 0.27 -0.9
108,379 + 15736 mRNA_7368 0.29 0.3
108,517 - 15736 mRNA_7368 0.34 0.1
109,180 - 15736 mRNA_7368 0.55 -0.4
109,474 - 15736 mRNA_7368 0.64 2.5
109,518 - 15736 mRNA_7368 0.65 -2.4
109,942 + 15736 mRNA_7368 0.79 -0.1
109,993 + 15736 mRNA_7368 0.80 -1.5
110,134 - 15736 mRNA_7368 0.85 1.4
110,272 + 15736 mRNA_7368 0.89 -1.4
110,411 - -1.4
110,411 - -0.5
110,573 + 0.4
110,688 + -1.2
110,708 + 0.1
110,727 + 0.1
110,728 - 1.6
110,731 + -0.9
110,743 + 0.8
110,745 - 0.7
110,747 - -1.0
110,750 + 0.6
110,750 - 2.6
110,755 + -0.9
110,757 + -0.0
110,763 + -0.3
110,764 + 2.3
110,851 - -0.7
110,878 - 1.1
110,886 - 0.6
110,892 - -1.1
110,904 + -2.1
110,904 + 1.6
110,905 - 1.6
110,929 - 0.5
110,945 - 0.7
110,949 - -0.6
110,950 + 0.2
110,958 + 0.3
110,979 - -0.7
111,011 - -0.0
111,022 + 1.8
111,023 - 0.7
111,034 + 0.3
111,040 - 0.6
111,178 - 0.5
111,225 + 0.3