Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7367

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104446 to 105512 15734 mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106324 to 107108 15735 mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107448 to 110616 15736

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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105,656 - 0.0
105,677 + 1.0
105,758 + 0.9
105,799 + 0.1
105,805 - -0.3
105,809 - -0.8
105,911 + 0.5
105,913 - -1.0
105,915 + 0.5
105,938 - 1.3
105,942 - 3.2
105,943 + 0.1
105,955 - -0.0
106,231 - -1.1
106,235 + 1.1
106,237 - -0.5
106,254 - -0.3
106,271 + 0.5
106,271 - -1.0
106,274 + -0.5
106,387 + 0.2
106,387 - -0.2
106,408 + 15735 mRNA_7367 0.11 0.5
106,408 - 15735 mRNA_7367 0.11 -0.3
106,578 + 15735 mRNA_7367 0.32 -1.3
106,644 - 15735 mRNA_7367 0.41 1.4
106,692 - 15735 mRNA_7367 0.47 -0.1
106,724 + 15735 mRNA_7367 0.51 1.3
106,855 - 15735 mRNA_7367 0.68 -0.6
106,887 - 15735 mRNA_7367 0.72 -0.0
106,892 + 15735 mRNA_7367 0.72 0.5
107,196 + 0.3
107,432 - -0.6
107,440 - 1.7
107,445 - 1.6
107,599 - -0.5
107,759 + 1.4
107,777 - 15736 mRNA_7368 0.10 1.1
108,049 + 15736 mRNA_7368 0.19 0.1