Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7355

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7354: 15722 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 77148 to 79118 15722 mRNA_7355: 15723 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 79424 to 80346 15723 mRNA_7356: 15724 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 80898 to 81821 15724

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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78,743 + 15722 mRNA_7354 0.81 0.2
78,864 - 15722 mRNA_7354 0.87 -0.2
78,885 - 15722 mRNA_7354 0.88 -0.5
79,196 + -0.8
79,204 - 0.1
79,210 - -1.9
79,346 + -0.5
79,350 + 1.5
79,377 - 0.3
79,381 + -2.0
79,396 + 0.4
79,530 - 15723 mRNA_7355 0.11 0.6
79,545 - 15723 mRNA_7355 0.13 0.8
80,002 - 15723 mRNA_7355 0.63 -0.6
80,292 - -2.0
80,293 + 2.1
80,394 - 0.7
80,501 - -0.5
80,501 - -1.5
80,501 - 0.6
80,501 - 0.3
80,512 + -0.6
80,563 + 1.3
80,693 - 2.9
80,702 - 0.1
80,724 - -1.2
81,121 - 15724 mRNA_7356 0.24 1.1
81,268 - 15724 mRNA_7356 0.40 0.8
81,277 - 15724 mRNA_7356 0.41 -0.2