Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46801 to 48602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49119 to 56418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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48,306 + 15712 mRNA_7344 0.84 -1.0
48,340 - 15712 mRNA_7344 0.85 -1.1
48,514 - -0.2
48,656 - 0.3
48,657 - 1.3
48,658 - 0.3
48,659 + -0.2
48,665 - 1.5
48,670 + 1.0
48,673 + 0.0
48,682 + -0.5
48,686 - 0.0
48,691 + 0.3
48,695 + -0.2
48,785 - -1.4
48,809 - 0.8
48,810 - -2.5
48,812 - -0.5
48,834 - 0.4
48,857 - -0.4
48,869 - 0.7
48,871 - 1.8
48,877 - -1.4
48,891 + -1.5
48,892 - -0.9
48,948 - 0.8
49,009 - -0.2
49,086 + 0.3
49,113 - 0.1
49,193 + 0.1
49,449 - -1.8
49,679 + 0.6
49,704 + 0.2
49,812 + 0.8
50,053 - 15713 mRNA_7345 0.13 1.0
50,127 - 15713 mRNA_7345 0.14 1.6
50,301 - 15713 mRNA_7345 0.16 0.1
50,312 + 15713 mRNA_7345 0.16 2.5
50,390 - 15713 mRNA_7345 0.17 1.4
50,843 + 15713 mRNA_7345 0.24 0.1
50,894 - 15713 mRNA_7345 0.24 1.6
50,915 + 15713 mRNA_7345 0.25 -0.0
50,941 - 15713 mRNA_7345 0.25 0.1
51,223 + 15713 mRNA_7345 0.29 -0.1
51,441 - 15713 mRNA_7345 0.32 0.1
51,801 - 15713 mRNA_7345 0.37 -1.1
51,849 + 15713 mRNA_7345 0.37 -0.6
51,884 + 15713 mRNA_7345 0.38 -1.4
51,912 + 15713 mRNA_7345 0.38 0.9
52,138 - 15713 mRNA_7345 0.41 -0.0
52,148 + 15713 mRNA_7345 0.41 1.0
52,148 + 15713 mRNA_7345 0.41 0.4
52,187 - 15713 mRNA_7345 0.42 0.4
52,265 + 15713 mRNA_7345 0.43 1.8
52,705 + 15713 mRNA_7345 0.49 1.6
52,726 - 15713 mRNA_7345 0.49 1.3
52,726 - 15713 mRNA_7345 0.49 -1.7
52,726 - 15713 mRNA_7345 0.49 0.2
52,777 + 15713 mRNA_7345 0.50 -0.4
52,804 + 15713 mRNA_7345 0.50 1.6
52,904 - 15713 mRNA_7345 0.52 -1.0
53,045 - 15713 mRNA_7345 0.54 -0.3
53,083 - 15713 mRNA_7345 0.54 1.1
53,148 - 15713 mRNA_7345 0.55 -0.2
54,129 - 15713 mRNA_7345 0.69 0.8
54,246 - 15713 mRNA_7345 0.70 0.4
54,429 - 15713 mRNA_7345 0.73 0.6
54,448 + 15713 mRNA_7345 0.73 0.5
54,574 + 15713 mRNA_7345 0.75 1.4
54,789 + 15713 mRNA_7345 0.78 -0.1
54,825 + 15713 mRNA_7345 0.78 2.7
55,326 + 15713 mRNA_7345 0.85 -0.7
55,636 + 15713 mRNA_7345 0.89 0.0
55,636 + 15713 mRNA_7345 0.89 0.3
55,839 - 0.3
55,864 - 0.2
56,023 - 1.5
56,392 - 1.4
56,461 - 0.2
56,600 - 1.8
56,632 + -1.6
56,640 + -0.1
56,648 + -1.3
56,651 + -2.9
56,793 - -1.1
56,794 + 1.0
56,803 + 1.7
56,811 + -1.0
56,817 + 0.1
56,818 - 1.4
56,832 + -0.8
56,845 + -0.7
56,913 - 3.3
56,918 - 0.2
56,938 - 0.7
56,951 + 0.8
56,964 - 0.4
56,976 + 2.8
56,977 + -0.2
56,981 + -0.5
56,985 + 0.3
56,986 + 2.7
56,990 - -0.5
56,991 - 1.2
56,997 + 1.5
57,052 - -0.1
57,055 + 1.2
57,065 + 0.4
57,074 + 1.8
57,079 - -0.5
57,091 - 0.5
57,092 + 0.6
57,096 - -1.0
57,098 - -0.7
57,101 + -1.9
57,101 + 0.7
57,101 + -0.4
57,110 - -0.2
57,120 - 1.0
57,195 + -0.4
57,206 - 0.1
57,219 + -0.6
57,243 + -0.1
57,254 + 1.1
57,260 - -0.3
57,266 + 1.3
57,267 - 2.2
57,268 + 1.4
57,272 - 0.2
57,291 + 1.3
57,347 + 1.1