Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7344

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45735 to 46573 15711 mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46801 to 48602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49119 to 56418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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46,292 - 15711 mRNA_7343 0.66 0.4
46,598 - 0.3
46,749 - 1.0
46,854 + -0.9
46,870 - 0.2
47,603 - 15712 mRNA_7344 0.45 0.7
47,890 - 15712 mRNA_7344 0.60 2.6
47,897 + 15712 mRNA_7344 0.61 2.0
47,924 + 15712 mRNA_7344 0.62 0.0
48,306 + 15712 mRNA_7344 0.84 -1.0
48,340 - 15712 mRNA_7344 0.85 -1.1
48,514 - -0.2
48,656 - 0.3
48,657 - 1.3
48,658 - 0.3
48,659 + -0.2
48,665 - 1.5
48,670 + 1.0
48,673 + 0.0
48,682 + -0.5
48,686 - 0.0
48,691 + 0.3
48,695 + -0.2
48,785 - -1.4
48,809 - 0.8
48,810 - -2.5
48,812 - -0.5
48,834 - 0.4
48,857 - -0.4
48,869 - 0.7
48,871 - 1.8
48,877 - -1.4
48,891 + -1.5
48,892 - -0.9
48,948 - 0.8
49,009 - -0.2
49,086 + 0.3
49,113 - 0.1
49,193 + 0.1
49,449 - -1.8