Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7339

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35529 to 37856 15706 mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38235 to 39594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39779 to 41768 15708

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,930 - 0.3
37,934 + 0.4
37,975 - 1.1
37,980 - 1.4
37,987 + -0.3
37,999 - 0.2
38,003 + -0.2
38,130 - 0.5
38,321 - 0.3
38,336 + 0.2
38,451 + 15707 mRNA_7339 0.16 -0.2
38,465 + 15707 mRNA_7339 0.17 0.7
38,635 - 15707 mRNA_7339 0.29 0.5
38,891 + 15707 mRNA_7339 0.48 0.8
38,904 - 15707 mRNA_7339 0.49 -1.0
39,308 + 15707 mRNA_7339 0.79 -2.7
39,336 + 15707 mRNA_7339 0.81 1.4
39,347 + 15707 mRNA_7339 0.82 -1.5
39,443 + 15707 mRNA_7339 0.89 -0.3
39,578 - 0.8
39,604 - -0.9
39,626 + -0.0
39,635 - -0.5
39,640 + -0.7
39,786 + 0.4
40,200 - 15708 mRNA_7340 0.21 1.0
40,202 - 15708 mRNA_7340 0.21 0.6
40,203 + 15708 mRNA_7340 0.21 1.1
40,249 + 15708 mRNA_7340 0.24 -0.9
40,544 + 15708 mRNA_7340 0.38 -0.3