Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7329

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19651 to 22039 15697 mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22556 to 24304 15698

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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18,813 + -1.6
19,048 - -0.2
19,062 - 1.3
19,122 + 0.4
19,182 - 3.7
19,219 - -0.2
19,227 + 0.1
19,227 + 1.6
19,228 - -0.0
19,336 - 0.0
19,338 - -1.0
19,343 + -1.2
19,356 - 0.5
19,369 - 0.0
19,503 + -0.3
19,843 - -0.2
19,890 - 15697 mRNA_7329 0.10 0.3
19,953 + 15697 mRNA_7329 0.13 -0.3
19,962 + 15697 mRNA_7329 0.13 -0.3
20,120 + 15697 mRNA_7329 0.20 2.0
20,214 - 15697 mRNA_7329 0.24 1.1
20,226 + 15697 mRNA_7329 0.24 -0.5
20,226 + 15697 mRNA_7329 0.24 -1.3
20,229 - 15697 mRNA_7329 0.24 -0.4
20,232 - 15697 mRNA_7329 0.24 -0.1
20,701 + 15697 mRNA_7329 0.44 -0.6
20,830 - 15697 mRNA_7329 0.49 0.8
21,159 - 15697 mRNA_7329 0.63 0.6
21,279 - 15697 mRNA_7329 0.68 -0.6
21,687 + 15697 mRNA_7329 0.85 2.9
21,838 - 1.5
21,990 + 0.3
21,996 - 2.2
22,283 - 0.1
22,425 - -0.1
22,446 - -1.7