Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7326

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10926 to 12277 15693 mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12485 to 14861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15080 to 16504 15695

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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11,501 - 15693 mRNA_7325 0.43 0.0
11,631 - 15693 mRNA_7325 0.52 0.5
11,788 + 15693 mRNA_7325 0.64 2.4
11,919 + 15693 mRNA_7325 0.73 -0.7
12,049 - 15693 mRNA_7325 0.83 0.3
12,066 - 15693 mRNA_7325 0.84 2.2
12,198 - -0.2
12,204 - -0.1
12,223 + -0.6
12,348 + 0.6
12,348 - 0.5
12,349 + 0.2
12,355 - 1.3
12,358 + -0.3
12,360 + 2.8
12,366 - 1.6
12,406 - 0.0
12,528 - 1.1
12,547 - 0.5
13,043 - 15694 mRNA_7326 0.23 0.6
13,147 - 15694 mRNA_7326 0.28 1.2
13,160 + 15694 mRNA_7326 0.28 -1.2
13,270 + 15694 mRNA_7326 0.33 1.6
13,528 + 15694 mRNA_7326 0.44 0.5
13,751 + 15694 mRNA_7326 0.53 -0.1
14,287 - 15694 mRNA_7326 0.76 -2.0
14,307 + 15694 mRNA_7326 0.77 0.7
14,508 + 15694 mRNA_7326 0.85 -0.2
14,779 + -1.1
14,794 - 0.7
14,908 + -0.1
14,911 - 0.2
14,911 - 0.7
14,920 + 1.5
14,945 - -0.1
14,945 - 0.2
14,958 + 0.3
14,972 + 3.0
14,989 + -0.6
14,993 + -0.2
15,064 - -0.2
15,090 - 1.6
15,104 + -0.4
15,370 - 15695 mRNA_7327 0.20 -2.1
15,373 + 15695 mRNA_7327 0.21 -1.3
15,541 + 15695 mRNA_7327 0.32 -3.0
15,545 + 15695 mRNA_7327 0.33 0.7
15,548 + 15695 mRNA_7327 0.33 2.1
15,721 + 15695 mRNA_7327 0.45 0.9
15,781 + 15695 mRNA_7327 0.49 -1.2
15,781 - 15695 mRNA_7327 0.49 -0.7