Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7324

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6530 to 7758 15691 mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8009 to 10735 15692 mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10926 to 12277 15693

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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7,806 - 1.1
7,809 - -1.4
7,940 + 1.1
7,958 - 1.1
7,961 - -1.2
7,969 - -0.3
7,974 - 2.1
8,104 - -0.2
8,107 - -0.3
8,123 + -0.0
8,138 - 1.0
8,277 - 0.4
8,392 - 15692 mRNA_7324 0.14 1.7
8,429 + 15692 mRNA_7324 0.15 -0.5
8,569 + 15692 mRNA_7324 0.21 4.2
8,575 + 15692 mRNA_7324 0.21 -0.1
8,666 + 15692 mRNA_7324 0.24 1.0
8,678 - 15692 mRNA_7324 0.25 -0.4
8,682 + 15692 mRNA_7324 0.25 1.6
8,702 - 15692 mRNA_7324 0.25 2.1
8,818 + 15692 mRNA_7324 0.30 -0.3
8,862 - 15692 mRNA_7324 0.31 0.6
9,008 + 15692 mRNA_7324 0.37 -0.3
9,029 - 15692 mRNA_7324 0.37 0.2
9,174 - 15692 mRNA_7324 0.43 -0.5
9,375 - 15692 mRNA_7324 0.50 -0.7
9,441 - 15692 mRNA_7324 0.53 -0.8
9,555 - 15692 mRNA_7324 0.57 -0.5
9,559 - 15692 mRNA_7324 0.57 1.1
9,709 - 15692 mRNA_7324 0.62 1.2
9,858 - 15692 mRNA_7324 0.68 0.3
9,865 + 15692 mRNA_7324 0.68 -1.1
10,155 - 15692 mRNA_7324 0.79 0.5
10,487 - -0.1
10,512 + -1.9
10,628 + 0.6
10,746 + -0.5
10,770 + -1.8
11,170 - 15693 mRNA_7325 0.18 0.1
11,306 - 15693 mRNA_7325 0.28 1.4
11,501 - 15693 mRNA_7325 0.43 0.0
11,631 - 15693 mRNA_7325 0.52 0.5