Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1943 to 3763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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14 + 0.3
14 + -1.8
14 + 0.5
14 + -1.4
22 + 0.9
29 + -0.4
35 + 0.9
45 + 0.8
66 + -1.6
68 + 2.8
71 - -0.4
105 + 0.2
120 - 0.3
120 + 1.9
121 - 0.5
122 - -0.4
126 + 0.7
126 + -0.8
131 - 2.6
135 - 0.7
135 + -3.1
135 + -1.6
135 + 0.7
135 - -0.8
142 - 0.7
148 + 1.9
153 + 0.8
159 - 1.0
159 - -0.8
161 + -0.0
168 - 0.6
195 + 1.2
233 + 1.7
263 + 15688 mRNA_7320 0.11 -0.1
267 - 15688 mRNA_7320 0.11 2.7
301 - 15688 mRNA_7320 0.14 1.2
310 - 15688 mRNA_7320 0.14 -0.9
313 + 15688 mRNA_7320 0.15 -0.1
313 + 15688 mRNA_7320 0.15 -0.0
319 + 15688 mRNA_7320 0.15 0.2
322 - 15688 mRNA_7320 0.15 0.4
340 - 15688 mRNA_7320 0.16 3.5
345 + 15688 mRNA_7320 0.17 -0.2
357 + 15688 mRNA_7320 0.18 -0.6
359 + 15688 mRNA_7320 0.18 -0.5
365 - 15688 mRNA_7320 0.18 1.1
401 - 15688 mRNA_7320 0.21 2.6
401 - 15688 mRNA_7320 0.21 0.5
401 + 15688 mRNA_7320 0.21 -0.1
405 + 15688 mRNA_7320 0.21 1.6
415 + 15688 mRNA_7320 0.22 0.6
428 - 15688 mRNA_7320 0.23 1.1
461 - 15688 mRNA_7320 0.25 -0.2
462 + 15688 mRNA_7320 0.25 -1.7
466 - 15688 mRNA_7320 0.25 -0.6
482 + 15688 mRNA_7320 0.26 1.3
488 - 15688 mRNA_7320 0.27 1.1
573 - 15688 mRNA_7320 0.33 -2.2
594 - 15688 mRNA_7320 0.34 0.2
595 + 15688 mRNA_7320 0.34 1.1
595 + 15688 mRNA_7320 0.34 -0.6
625 - 15688 mRNA_7320 0.36 0.5
644 + 15688 mRNA_7320 0.38 -2.4
644 + 15688 mRNA_7320 0.38 2.3
648 + 15688 mRNA_7320 0.38 -0.3
654 - 15688 mRNA_7320 0.38 0.9
654 + 15688 mRNA_7320 0.38 1.7
713 + 15688 mRNA_7320 0.43 -2.6
753 - 15688 mRNA_7320 0.45 -1.8
756 - 15688 mRNA_7320 0.46 1.0
763 + 15688 mRNA_7320 0.46 0.4
765 + 15688 mRNA_7320 0.46 0.2
778 + 15688 mRNA_7320 0.47 1.1
811 - 15688 mRNA_7320 0.49 0.7
921 + 15688 mRNA_7320 0.57 1.3
945 + 15688 mRNA_7320 0.59 0.5
1,059 + 15688 mRNA_7320 0.67 -2.0
1,167 + 15688 mRNA_7320 0.74 -0.1
1,174 + 15688 mRNA_7320 0.75 0.4
1,182 - 15688 mRNA_7320 0.75 0.1
1,196 + 15688 mRNA_7320 0.76 0.3
1,218 + 15688 mRNA_7320 0.78 1.2
1,258 + 15688 mRNA_7320 0.81 0.8
1,326 - 15688 mRNA_7320 0.85 -1.2
1,360 + 15688 mRNA_7320 0.88 0.4
1,366 + 15688 mRNA_7320 0.88 1.0
1,497 - -0.1
1,518 + -0.3
1,582 + 1.4
1,666 - 1.4
1,675 + -0.4
1,789 - 0.4
1,907 + -0.5
1,929 + 1.5
1,948 + -2.1
2,105 - 0.5
2,297 - 15689 mRNA_7321 0.19 2.1
2,508 - 15689 mRNA_7321 0.31 1.4
2,521 + 15689 mRNA_7321 0.32 2.8
2,526 + 15689 mRNA_7321 0.32 0.5
2,529 - 15689 mRNA_7321 0.32 1.4
2,529 - 15689 mRNA_7321 0.32 0.1