Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7287

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7286: 15654 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 1298455 to 1300194 15654 mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1300523 to 1304371 15655 mRNA_7288: 15656 - Hypothetical Protein, at 1304833 to 1305984 15656

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,299,656 - 15654 mRNA_7286 0.69 -0.3
1,299,669 - 15654 mRNA_7286 0.70 2.1
1,299,771 - 15654 mRNA_7286 0.76 0.6
1,299,943 - 15654 mRNA_7286 0.86 1.2
1,300,039 - -0.3
1,300,063 + 0.1
1,300,083 - 0.1
1,300,098 - 0.5
1,300,212 + 1.1
1,300,239 - 1.4
1,300,394 + 1.6
1,300,531 - 0.2
1,300,532 - 1.8
1,300,667 - -1.2
1,301,131 + 15655 mRNA_7287 0.16 -0.2
1,301,167 + 15655 mRNA_7287 0.17 0.1
1,301,177 - 15655 mRNA_7287 0.17 2.1
1,301,351 - 15655 mRNA_7287 0.22 2.5
1,301,596 + 15655 mRNA_7287 0.28 -0.3
1,302,153 - 15655 mRNA_7287 0.42 0.3
1,302,263 + 15655 mRNA_7287 0.45 -0.9
1,302,830 + 15655 mRNA_7287 0.60 0.7
1,303,235 + 15655 mRNA_7287 0.70 -2.7
1,303,238 - 15655 mRNA_7287 0.71 0.1
1,303,418 + 15655 mRNA_7287 0.75 1.0
1,303,599 + 15655 mRNA_7287 0.80 3.8
1,303,898 + 15655 mRNA_7287 0.88 0.5
1,304,159 + 1.2
1,304,159 + 0.6
1,304,289 - 0.1
1,304,311 - 1.1
1,304,319 + 0.2
1,304,468 - 2.5
1,304,602 + 1.5
1,304,605 + -0.6
1,304,605 - 1.1
1,304,746 - -2.1
1,304,890 + -0.2
1,305,039 - 15656 mRNA_7288 0.18 0.6
1,305,184 + 15656 mRNA_7288 0.30 1.9
1,305,186 - 15656 mRNA_7288 0.31 1.3
1,305,194 - 15656 mRNA_7288 0.31 -0.3