Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7280

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7279: 15647 - K13698 ABHD4 abhydrolase domain-containing protein 4, at 1286393 to 1287273 15647 mRNA_7280: 15648 - Hypothetical Protein, at 1287531 to 1288393 15648 mRNA_7281: 15649 - HMMPfam-FAR1 DNA-binding domain-PF03101, at 1288862 to 1290260 15649

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,286,547 + 15647 mRNA_7279 0.17 0.4
1,286,727 + 15647 mRNA_7279 0.38 0.4
1,286,844 + 15647 mRNA_7279 0.51 0.7
1,287,009 + 15647 mRNA_7279 0.70 1.3
1,287,168 - 15647 mRNA_7279 0.88 1.6
1,287,176 + 15647 mRNA_7279 0.89 2.2
1,287,194 + 1.2
1,287,329 + 1.2
1,287,331 - -0.3
1,287,445 - 0.0
1,287,474 + 1.1
1,287,615 + 0.5
1,287,619 - 15648 mRNA_7280 0.10 3.2
1,287,870 + 15648 mRNA_7280 0.39 1.2
1,287,938 - 15648 mRNA_7280 0.47 1.3
1,288,323 - 0.6
1,288,490 + 0.9
1,288,589 - 1.6
1,288,670 + 1.7
1,288,691 - 1.4
1,288,692 + 2.3
1,288,749 + 1.5
1,289,340 - 15649 mRNA_7281 0.34 0.7
1,289,365 - 15649 mRNA_7281 0.36 0.5