Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7262

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7261: 15629 - SUPERFAMILY--SSF51735, at 1246601 to 1248053 15629 mRNA_7262: 15630 - HMMPfam-Peptidase M50B-like-PF13398, at 1248701 to 1250915 15630 mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1251489 to 1254335 15631

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,247,803 - 15629 mRNA_7261 0.83 -1.0
1,247,848 + 15629 mRNA_7261 0.86 -1.0
1,248,100 - 1.5
1,248,105 - 0.2
1,248,111 + 0.2
1,248,120 + -0.3
1,248,121 + 0.0
1,248,122 - 0.5
1,248,123 + -1.6
1,248,128 - 0.1
1,248,130 - 0.1
1,248,130 + -0.2
1,248,130 + -1.8
1,248,139 - 2.7
1,248,150 + 0.4
1,248,152 + -0.1
1,248,152 + -0.8
1,248,161 + -0.9
1,248,418 + 1.5
1,248,421 + 0.4
1,248,438 + -1.2
1,248,439 - 0.7
1,248,454 - 1.4
1,248,720 - 1.5
1,248,720 - -0.6
1,248,851 + -0.1
1,248,921 - 1.4
1,249,027 + 15630 mRNA_7262 0.15 -0.4
1,249,058 - 15630 mRNA_7262 0.16 -2.6
1,249,077 + 15630 mRNA_7262 0.17 0.5
1,249,173 - 15630 mRNA_7262 0.21 -0.2
1,249,479 - 15630 mRNA_7262 0.35 -0.7
1,250,016 + 15630 mRNA_7262 0.59 0.6
1,250,116 + 15630 mRNA_7262 0.64 0.6
1,250,181 + 15630 mRNA_7262 0.67 0.6
1,250,211 - 15630 mRNA_7262 0.68 0.1
1,250,218 + 15630 mRNA_7262 0.68 -1.6
1,250,337 - 15630 mRNA_7262 0.74 -0.4
1,250,340 - 15630 mRNA_7262 0.74 0.0
1,250,360 + 15630 mRNA_7262 0.75 -0.3
1,250,437 + 15630 mRNA_7262 0.78 0.4
1,250,601 + 15630 mRNA_7262 0.86 0.1
1,250,692 + 15630 mRNA_7262 0.90 -0.7
1,250,692 - 15630 mRNA_7262 0.90 -0.5
1,250,773 - 1.5
1,250,805 + 0.0
1,250,817 + -0.3
1,250,904 - 2.3
1,250,913 - -0.0
1,250,920 + -0.4
1,250,941 + -0.6
1,250,948 + -0.4
1,250,950 + 0.6
1,250,988 - -0.8
1,251,240 - 0.2
1,251,244 - 2.3
1,251,252 - 0.5
1,251,255 - 2.0
1,251,269 - -0.1
1,251,277 + -0.2
1,251,278 - -1.7
1,251,278 + -0.4
1,251,296 - -1.0
1,251,387 - 1.0
1,251,397 - 4.7
1,251,413 - -0.0
1,251,417 - 1.3