Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7168

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1035415 to 1036383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1036576 to 1038409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1038666 to 1040206 15537

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,035,644 - 15535 mRNA_7167 0.24 1.5
1,035,658 + 15535 mRNA_7167 0.25 1.7
1,035,664 - 15535 mRNA_7167 0.26 -0.0
1,035,665 + 15535 mRNA_7167 0.26 1.2
1,035,687 + 15535 mRNA_7167 0.28 0.8
1,035,737 - 15535 mRNA_7167 0.33 -0.0
1,035,887 + 15535 mRNA_7167 0.49 0.6
1,036,045 + 15535 mRNA_7167 0.65 0.0
1,036,189 - 15535 mRNA_7167 0.80 0.2
1,036,265 + 15535 mRNA_7167 0.88 -0.2
1,036,281 + 15535 mRNA_7167 0.89 -1.0
1,036,298 + 2.5
1,036,354 + 2.5
1,036,357 - 1.9
1,036,416 - -0.3
1,036,418 - -0.8
1,036,480 + 0.7
1,036,486 + -1.2
1,036,522 + -2.0
1,036,531 - 1.2
1,036,538 - 0.3
1,036,538 - -0.8
1,036,539 + -0.6
1,036,545 + 2.1
1,036,553 - -1.0
1,036,555 + 2.3
1,036,558 + -1.6
1,036,569 + -0.5
1,036,571 - -0.5
1,036,575 - 0.6
1,036,576 + -0.2
1,036,577 - 0.9
1,036,582 - 0.5
1,036,587 + 1.1
1,036,591 + -0.2
1,036,596 + 1.0
1,036,621 + -0.5
1,036,630 + 2.9
1,036,632 - 0.3
1,036,635 + 2.2
1,036,643 + -0.0
1,036,681 - 1.9
1,036,681 - 1.8
1,036,692 + -0.1
1,036,698 - 1.8
1,036,713 + 0.5
1,036,724 + 0.6
1,036,740 + -0.1
1,036,775 + 15536 mRNA_7168 0.11 1.5
1,036,789 + 15536 mRNA_7168 0.12 -1.8
1,036,867 + 15536 mRNA_7168 0.16 -0.8
1,036,895 + 15536 mRNA_7168 0.17 0.2
1,036,901 + 15536 mRNA_7168 0.18 0.9
1,036,906 + 15536 mRNA_7168 0.18 -0.6
1,036,906 - 15536 mRNA_7168 0.18 -2.0
1,036,908 - 15536 mRNA_7168 0.18 0.4
1,036,918 + 15536 mRNA_7168 0.19 -0.1
1,036,938 + 15536 mRNA_7168 0.20 0.4
1,036,952 - 15536 mRNA_7168 0.21 1.0
1,036,972 + 15536 mRNA_7168 0.22 3.0
1,037,005 + 15536 mRNA_7168 0.23 1.5
1,037,017 - 15536 mRNA_7168 0.24 0.9
1,037,054 - 15536 mRNA_7168 0.26 0.4
1,037,056 - 15536 mRNA_7168 0.26 -0.2
1,037,070 + 15536 mRNA_7168 0.27 -0.7
1,037,073 + 15536 mRNA_7168 0.27 2.1
1,037,087 + 15536 mRNA_7168 0.28 2.5
1,037,164 - 15536 mRNA_7168 0.32 0.4
1,037,213 + 15536 mRNA_7168 0.35 -0.8
1,037,221 - 15536 mRNA_7168 0.35 0.4
1,037,518 - 15536 mRNA_7168 0.51 0.1
1,037,524 + 15536 mRNA_7168 0.52 -0.9
1,037,769 - 15536 mRNA_7168 0.65 -0.1
1,037,797 + 15536 mRNA_7168 0.67 -1.9
1,037,803 - 15536 mRNA_7168 0.67 0.3
1,037,935 + 15536 mRNA_7168 0.74 -0.5
1,037,998 - 15536 mRNA_7168 0.78 1.2
1,038,097 - 15536 mRNA_7168 0.83 1.1
1,038,097 + 15536 mRNA_7168 0.83 1.2
1,038,209 - 15536 mRNA_7168 0.89 -0.4
1,038,233 - -0.8
1,038,235 - -0.8
1,038,240 + 3.7
1,038,380 + 0.7
1,038,380 - -0.3
1,038,387 + -0.8
1,038,398 - -0.3
1,038,400 + -0.5
1,038,537 - 3.2
1,038,538 + -0.0
1,038,545 - -0.6
1,038,552 + 2.2
1,039,125 + 15537 mRNA_7169 0.30 -1.0