Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7143

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979628 to 983826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984352 to 987514 15511 mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988436 to 990722 15512

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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983,415 + -1.1
983,546 + 3.0
983,695 - 1.0
983,707 - -0.1
983,717 - 0.5
984,006 - 0.2
984,154 + 2.0
984,577 - 0.7
984,578 - 0.9
984,608 + 1.1
984,624 + 0.3
985,013 - 15511 mRNA_7143 0.21 0.7
985,097 + 15511 mRNA_7143 0.24 2.5
985,390 + 15511 mRNA_7143 0.33 1.1
985,494 - 15511 mRNA_7143 0.36 0.4
985,598 - 15511 mRNA_7143 0.39 2.7
985,598 + 15511 mRNA_7143 0.39 -0.0
985,706 + 15511 mRNA_7143 0.43 -0.5
985,841 + 15511 mRNA_7143 0.47 0.1
985,994 - 15511 mRNA_7143 0.52 0.0
986,148 + 15511 mRNA_7143 0.57 0.4
986,154 + 15511 mRNA_7143 0.57 3.1
986,156 - 15511 mRNA_7143 0.57 1.5
986,189 + 15511 mRNA_7143 0.58 0.8
986,565 + 15511 mRNA_7143 0.70 2.3
986,754 - 15511 mRNA_7143 0.76 -0.4
986,845 - 15511 mRNA_7143 0.79 0.7
987,024 - 15511 mRNA_7143 0.84 0.4
987,041 - 15511 mRNA_7143 0.85 0.8
987,139 - 15511 mRNA_7143 0.88 1.1
987,321 - 0.3
987,332 - 0.1
987,370 - -0.2
987,791 - -0.3
987,800 + -0.3
987,922 + 0.0
988,061 - 0.3
988,070 + -0.4
988,083 - -0.6
988,194 - 0.5
988,202 + 1.8
988,211 - 0.9
988,219 + -0.3