Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7116

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915636 to 918075 15483 mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918589 to 919535 15484 mRNA_7117: 15485 - K12868 SYF2 pre-mRNA-splicing factor SYF2, at 920299 to 921602 15485

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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917,602 + 15483 mRNA_7115 0.81 0.5
917,728 + 15483 mRNA_7115 0.86 -0.8
917,863 - 1.3
917,880 + -0.1
917,999 - 0.2
918,120 - -0.7
918,144 + -0.6
918,147 - 1.5
918,153 - -2.2
918,153 + 0.6
918,153 + 0.4
918,166 - 2.2
918,186 - 0.2
918,192 + 0.0
918,305 - 0.7
918,445 + 0.3
918,736 + 15484 mRNA_7116 0.16 -0.5
918,863 - 15484 mRNA_7116 0.29 0.5
919,302 + 15484 mRNA_7116 0.75 0.6
919,304 + 15484 mRNA_7116 0.76 0.3
919,337 + 15484 mRNA_7116 0.79 -0.1
919,451 + 0.2
919,487 - 1.0
919,496 + 1.6
919,515 - -1.1
919,588 + 0.4
919,598 - 4.2
919,623 + 1.0
919,624 + 0.3
919,636 + 0.3
919,790 - -0.1
919,791 + 0.3
919,794 + 0.5
919,800 + 1.3
919,937 - 1.1
919,942 - 1.2
920,082 - 0.9
920,083 + 4.5
920,107 + -0.5
920,108 + -1.4
920,112 - 0.2
920,237 + -0.1
920,238 + 1.8
920,251 + 0.6
920,255 + -0.0