Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7111

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906529 to 908168 15478 mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908449 to 909688 15479 mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910088 to 911391 15480

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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907,823 - 15478 mRNA_7110 0.79 -0.8
907,973 - 15478 mRNA_7110 0.88 0.6
908,138 + 0.1
908,240 + 0.3
908,244 + -1.1
908,269 - 0.8
908,988 - 15479 mRNA_7111 0.43 -0.9
909,154 - 15479 mRNA_7111 0.57 0.1
909,438 + 15479 mRNA_7111 0.80 1.2
909,592 + 0.9
909,596 + 2.6
909,730 - -0.0
909,751 - 2.0
909,878 - 1.0
909,883 + -2.1
909,885 + 1.2
909,886 - -0.4
909,892 - 0.7
909,897 + 0.5
909,903 + -0.5
909,905 - 1.9
909,906 - 2.5
910,018 + -0.8
910,020 + -0.9
910,029 - 1.2
910,029 + -1.5
910,046 - 0.3
910,068 + 1.6
910,174 - -2.3
910,440 + 15480 mRNA_7112 0.27 0.5
910,452 - 15480 mRNA_7112 0.28 0.4
910,535 + 15480 mRNA_7112 0.34 2.4