Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7073

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476 15440 mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819072 to 820252 15441

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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818,269 + -0.3
818,301 - 0.9
818,403 + 0.6
818,587 - 0.1
818,589 - -1.3
818,640 - 2.3
818,733 - 0.6
818,739 + -1.5
818,742 + 1.5
818,757 - 2.0
818,779 - 0.6
818,788 + -0.0
818,802 + -0.0
818,811 - 0.2
818,891 - 1.4
818,982 - -0.1
819,028 - 1.3
819,029 - 2.5
819,032 + -0.6
819,039 + 2.0
819,042 + 1.4
819,451 + 15441 mRNA_7073 0.32 0.4
819,761 - 15441 mRNA_7073 0.58 -2.0
820,057 - 15441 mRNA_7073 0.83 -0.2
820,067 + 15441 mRNA_7073 0.84 0.2
820,353 + 1.3
820,652 - 0.7
820,839 - 1.2