Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7056

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7055: 15423 - K03841 FBP, fbp fructose-1,6-bisphosphatase I, at 774217 to 775850 15423 mRNA_7056: 15424 - K01557 FAHD1 acylpyruvate hydrolase, at 776372 to 777538 15424 mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777852 to 778935 15425

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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775,416 - 15423 mRNA_7055 0.73 1.4
775,446 + 15423 mRNA_7055 0.75 0.8
775,575 - 15423 mRNA_7055 0.83 0.8
775,636 + 15423 mRNA_7055 0.87 -2.5
775,704 + 1.4
775,708 - 0.8
775,726 + -0.7
775,734 - -0.2
775,738 - -1.2
775,739 + 1.5
775,739 - 2.1
775,740 + 2.3
775,746 + -0.4
775,749 + 0.6
775,846 - 1.8
775,861 + 0.6
775,903 - 0.7
776,013 - 1.3
776,026 - -1.8
776,028 - 0.3
776,032 + 2.8
776,034 - -0.9
776,043 - 0.7
776,043 + 1.1
776,047 - 2.7
776,050 - 0.1
776,051 - 0.5
776,053 - -0.3
776,057 + 1.9
776,058 + -0.2
776,062 - 2.2
776,064 - 1.4
776,077 + -1.2
776,124 - 1.1
776,125 - 1.0
776,132 - 0.1
776,132 - 0.9
776,147 + -0.2
776,149 - 0.4
776,168 + -2.7
776,179 - -0.1
776,208 + 2.9
776,298 - -0.8
776,305 + 0.5
776,307 + 1.1
776,324 - -1.3
776,442 + 2.9
776,445 - 1.3
776,763 + 15424 mRNA_7056 0.34 0.5
777,042 + 15424 mRNA_7056 0.57 0.1
777,050 - 15424 mRNA_7056 0.58 0.6
777,196 + 15424 mRNA_7056 0.71 1.6
777,311 - 15424 mRNA_7056 0.80 1.9
777,608 + -0.4
777,610 + 0.7
777,661 + -0.8
777,769 - 0.2
777,795 + 2.7
777,889 - 0.3
777,918 - -1.4
777,923 + -0.9
778,028 - 15425 mRNA_7057 0.16 2.1
778,039 - 15425 mRNA_7057 0.17 -2.0
778,059 - 15425 mRNA_7057 0.19 0.8
778,068 - 15425 mRNA_7057 0.20 0.4
778,368 - 15425 mRNA_7057 0.48 -0.2
778,393 + 15425 mRNA_7057 0.50 -1.1