Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7034

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7033: 15401 - Hypothetical Protein, at 715593 to 716570 15401 mRNA_7034: 15402 - HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934, at 717485 to 718005 15402 mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718322 to 720163 15403

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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716,762 + -1.5
717,187 + 0.5
717,188 - 1.6
717,205 - 0.2
717,319 - -0.6
717,327 + 0.8
717,339 + 0.8
717,486 + 0.3
717,602 - 15402 mRNA_7034 0.22 0.9
717,615 + 15402 mRNA_7034 0.25 3.0
717,617 - 15402 mRNA_7034 0.25 0.7
717,765 - 15402 mRNA_7034 0.54 2.0
717,767 - 15402 mRNA_7034 0.54 0.2
718,081 + 0.3