Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7022

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692794 to 694459 15389 mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694742 to 696268 15390 mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696469 to 700104 15391

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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694,769 + 0.9
694,890 - -0.5
695,063 - 15390 mRNA_7022 0.21 0.3
695,163 + 15390 mRNA_7022 0.28 0.2
695,180 - 15390 mRNA_7022 0.29 0.6
695,194 + 15390 mRNA_7022 0.30 0.0
695,323 + 15390 mRNA_7022 0.38 0.2
695,635 - 15390 mRNA_7022 0.58 0.1
695,902 - 15390 mRNA_7022 0.76 0.5
695,928 - 15390 mRNA_7022 0.78 0.2
695,929 - 15390 mRNA_7022 0.78 0.5
695,932 + 15390 mRNA_7022 0.78 0.5
695,937 + 15390 mRNA_7022 0.78 1.4
695,942 - 15390 mRNA_7022 0.79 0.1
696,053 - 15390 mRNA_7022 0.86 1.2
696,076 - 15390 mRNA_7022 0.87 0.4
696,077 + 15390 mRNA_7022 0.87 -0.5
696,080 - 15390 mRNA_7022 0.88 -0.6
696,082 + 15390 mRNA_7022 0.88 0.5
696,082 - 15390 mRNA_7022 0.88 1.9
696,230 + 0.3
696,357 - 2.3
696,359 + -0.2
696,363 - -1.6
696,367 - 0.2
696,387 - 1.4
696,533 - -1.2
696,681 + -0.9