Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7020

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686088 to 688034 15387 mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688229 to 691595 15388

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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687,471 - 15387 mRNA_7019 0.71 0.0
687,486 - 15387 mRNA_7019 0.72 -0.7
688,080 + 1.2
688,203 - -0.2
688,220 + 0.1
688,493 - 1.1
688,667 + 15388 mRNA_7020 0.13 -0.0
688,806 - 15388 mRNA_7020 0.17 0.2
689,199 + 15388 mRNA_7020 0.29 -0.7
689,848 + 15388 mRNA_7020 0.48 -1.6
689,959 - 15388 mRNA_7020 0.51 0.5
690,013 + 15388 mRNA_7020 0.53 -0.9
690,159 + 15388 mRNA_7020 0.57 1.2
690,861 - 15388 mRNA_7020 0.78 -0.5
691,170 + 15388 mRNA_7020 0.87 1.1
691,170 - 15388 mRNA_7020 0.87 5.0
691,299 - 0.9
691,451 - 0.1
691,456 + -0.1
691,478 + -1.3
691,479 + 0.7
691,495 + -0.1
691,602 + 1.1
691,630 + -0.0
691,630 + -1.4
691,633 - 0.2
691,633 - -1.1
691,763 - -0.7
691,767 - -0.6
691,780 - 1.6
691,780 + -1.2
691,792 + 0.5
691,794 + 0.9
691,796 - 1.6
691,796 - 1.0
691,939 + -1.0
691,940 - -2.2
692,072 - 1.0
692,081 + 2.6
692,084 - -0.1
692,232 - 1.0
692,248 + -0.8
692,393 - -0.3
692,395 + 2.5
692,395 + 0.3
692,527 + 0.6
692,528 + -0.3
692,553 - 0.9