Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7007

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375 mRNA_7008: 15376 - Hypothetical Protein, at 661061 to 661645 15376

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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658,925 - 0.2
658,937 - 0.4
658,939 + 0.6
659,067 - -1.0
659,079 + -1.5
659,234 + -0.0
659,235 - 0.1
659,374 - 1.2
659,388 - 2.2
659,493 + 0.5
659,506 - 0.8
659,519 - -0.0
659,534 + -0.5
659,539 - 0.9
659,540 + 3.0
659,548 + -0.8
659,564 - -0.3
659,579 - 0.0
659,579 - 0.8
659,584 + -0.1
659,709 - 0.0
659,736 - 0.3
659,841 + -1.0
659,857 + 0.6
660,001 - 15375 mRNA_7007 0.14 1.1
660,132 + 15375 mRNA_7007 0.30 0.5
660,310 + 15375 mRNA_7007 0.52 1.1
660,416 - 15375 mRNA_7007 0.66 1.8
660,459 - 15375 mRNA_7007 0.71 1.4
660,591 + 15375 mRNA_7007 0.87 0.9
660,613 - 0.8
660,631 + -1.0
660,728 - 0.3
660,729 - -0.2
660,736 - 0.2
660,741 - -0.1
660,741 - 1.0
660,743 - 0.0
660,752 - 0.7
660,753 - 0.0
660,757 + 1.6
660,757 + 1.1
660,758 - 0.4
660,764 - -0.5
660,765 - 0.1
660,773 + -0.6
660,780 - 1.2
660,783 - 0.7
660,785 + 0.0
660,789 - 2.9
660,804 + -0.4
660,808 - -0.1
660,814 + 0.5
660,824 - -0.2
660,829 + -0.4
660,835 + 1.7
660,842 - 0.2
660,843 + -0.0
660,847 + 0.6
660,851 + 0.2
660,910 + 0.4
660,919 - -0.7
660,923 - 0.9
660,936 + -0.4
660,949 + -0.7
660,960 + 0.4
660,982 + 0.2
661,131 - 15376 mRNA_7008 0.12 -0.6
661,280 + 15376 mRNA_7008 0.37 -0.6
661,283 + 15376 mRNA_7008 0.38 0.9
661,285 - 15376 mRNA_7008 0.38 -0.6
661,304 - 15376 mRNA_7008 0.42 0.3
661,381 - 15376 mRNA_7008 0.55 -0.0
661,500 + 15376 mRNA_7008 0.75 0.0
661,622 + 3.0
661,647 + 1.4