Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7006

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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653,269 - 15373 mRNA_7005 0.21 -0.7
653,270 - 15373 mRNA_7005 0.21 0.7
653,274 - 15373 mRNA_7005 0.22 1.2
653,278 + 15373 mRNA_7005 0.22 0.4
653,286 + 15373 mRNA_7005 0.23 0.3
653,288 - 15373 mRNA_7005 0.23 -1.1
653,294 + 15373 mRNA_7005 0.24 0.2
653,410 - 15373 mRNA_7005 0.37 0.6
653,864 - 15373 mRNA_7005 0.87 0.2
653,977 + 0.0
654,148 - -0.8
654,166 - 0.1
654,255 - 0.1
654,322 + -0.5
654,410 + 0.6
654,598 - 0.6
654,598 + 0.1
655,126 + 15374 mRNA_7006 0.18 0.8
655,269 - 15374 mRNA_7006 0.21 -2.1
655,607 + 15374 mRNA_7006 0.28 1.3
655,856 - 15374 mRNA_7006 0.33 0.8
655,922 - 15374 mRNA_7006 0.34 -2.7
655,961 + 15374 mRNA_7006 0.35 1.2
656,048 - 15374 mRNA_7006 0.37 1.7
656,093 - 15374 mRNA_7006 0.38 -0.4
656,356 - 15374 mRNA_7006 0.43 -1.1
656,467 - 15374 mRNA_7006 0.45 -1.1
656,512 + 15374 mRNA_7006 0.46 0.0
657,068 - 15374 mRNA_7006 0.58 -0.3
657,176 - 15374 mRNA_7006 0.60 -0.7
657,421 + 15374 mRNA_7006 0.65 0.7
657,565 - 15374 mRNA_7006 0.68 -0.5
657,573 - 15374 mRNA_7006 0.68 -0.3
657,864 + 15374 mRNA_7006 0.74 -2.4
657,885 - 15374 mRNA_7006 0.74 1.2
658,051 + 15374 mRNA_7006 0.78 1.7
658,061 - 15374 mRNA_7006 0.78 1.6
658,194 - 15374 mRNA_7006 0.81 -0.5
658,194 + 15374 mRNA_7006 0.81 -1.4
658,195 + 15374 mRNA_7006 0.81 0.8
658,400 - 15374 mRNA_7006 0.85 -0.8
658,463 - 15374 mRNA_7006 0.86 0.3
658,690 - 1.5
658,773 - -0.1
658,925 - 0.2
658,937 - 0.4
658,939 + 0.6
659,067 - -1.0
659,079 + -1.5
659,234 + -0.0
659,235 - 0.1
659,374 - 1.2
659,388 - 2.2
659,493 + 0.5
659,506 - 0.8
659,519 - -0.0
659,534 + -0.5
659,539 - 0.9
659,540 + 3.0
659,548 + -0.8
659,564 - -0.3
659,579 - 0.0
659,579 - 0.8
659,584 + -0.1
659,709 - 0.0
659,736 - 0.3
659,841 + -1.0
659,857 + 0.6
660,001 - 15375 mRNA_7007 0.14 1.1
660,132 + 15375 mRNA_7007 0.30 0.5