Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7003

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647498 to 649944 15371 mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650077 to 652863 15372

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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646,553 + -1.3
647,546 - -0.1
647,688 - 0.3
647,703 - 0.6
647,729 - 0.1
647,741 + -1.1
648,416 - 15371 mRNA_7003 0.38 -0.5
648,714 + 15371 mRNA_7003 0.50 1.3
648,855 - 15371 mRNA_7003 0.55 -0.1
649,748 - 1.8
649,752 + 0.8
649,865 - 0.7
649,892 + 0.4
649,905 + 0.9
650,016 + 0.3
650,048 + 0.4
650,156 - 1.1
650,173 + 2.4
650,177 + 2.8
650,335 - 1.0
650,348 + 0.0
650,357 - 15372 mRNA_7004 0.10 0.3
650,365 - 15372 mRNA_7004 0.10 -0.7
650,492 - 15372 mRNA_7004 0.15 3.1
650,494 + 15372 mRNA_7004 0.15 0.1
650,624 - 15372 mRNA_7004 0.20 0.3