Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7000

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367 mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638366 to 642076 15368 mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642201 to 644311 15369

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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637,376 + 15367 mRNA_6999 0.74 -0.4
637,491 - 15367 mRNA_6999 0.82 1.2
637,508 - 15367 mRNA_6999 0.83 0.4
637,657 - 0.7
637,678 - 0.9
637,780 - 0.4
637,847 + 2.5
637,981 + -0.6
637,987 - -0.0
637,988 + 1.6
637,996 - -0.4
637,999 + 0.4
638,000 + -0.1
638,279 + -0.1
638,287 + 0.0
638,426 + 0.1
638,564 + 0.7
638,584 - 0.5
638,590 + 0.6
638,996 - 15368 mRNA_7000 0.17 0.7
638,999 - 15368 mRNA_7000 0.17 0.6
639,020 - 15368 mRNA_7000 0.18 0.9
639,276 + 15368 mRNA_7000 0.25 -0.1
639,451 - 15368 mRNA_7000 0.29 2.3
639,562 - 15368 mRNA_7000 0.32 0.3
639,736 + 15368 mRNA_7000 0.37 0.6
639,771 + 15368 mRNA_7000 0.38 0.3
640,032 + 15368 mRNA_7000 0.45 -0.3
640,259 - 15368 mRNA_7000 0.51 0.2
640,575 + 15368 mRNA_7000 0.60 0.2
640,964 - 15368 mRNA_7000 0.70 -0.1
641,072 + 15368 mRNA_7000 0.73 2.1
641,326 + 15368 mRNA_7000 0.80 0.0
641,781 + -0.0
642,010 - -0.4
642,081 + 1.9
642,641 - 15369 mRNA_7001 0.21 -0.7
643,024 - 15369 mRNA_7001 0.39 1.0