Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6991

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615563 to 617347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573 15360

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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617,141 + 15358 mRNA_6990 0.88 -0.6
617,427 + -1.4
617,499 + 2.3
617,501 - 0.5
617,516 - -1.0
617,536 - 1.0
617,542 + 2.7
617,560 - 0.3
617,567 - -1.6
617,570 - 0.3
617,575 + -0.6
617,576 - -3.6
617,577 - -0.6
617,581 - -1.3
617,582 + 0.0
617,583 + -0.0
617,584 + 1.2
617,590 - -0.6
617,595 + 0.6
617,603 - -0.1
617,610 - 1.4
617,676 - 0.0
617,689 - 0.0
617,694 + -0.3
617,853 - 0.8
618,121 + 1.1
618,140 - -0.0
618,156 - 1.1
618,169 + 0.9
618,309 - 15359 mRNA_6991 0.15 1.8
618,313 + 15359 mRNA_6991 0.15 -0.6
618,475 + 15359 mRNA_6991 0.23 0.5
618,732 - 15359 mRNA_6991 0.36 0.8
619,045 + 15359 mRNA_6991 0.51 0.1
619,575 + 15359 mRNA_6991 0.76 1.5
619,923 - 0.2
619,928 + -0.5
620,080 - 0.5
620,085 + 1.9
620,106 - 2.3
620,115 + 1.0
620,494 - 1.4
620,513 - -0.8
620,523 - -0.3
620,541 + 0.7
620,633 + 1.3
620,653 - 15360 mRNA_6992 0.10 0.1
620,664 - 15360 mRNA_6992 0.11 1.3
620,676 + 15360 mRNA_6992 0.11 0.9