Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6978

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346 mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586264 to 588274 15347

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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583,496 + 15344 mRNA_6976 0.77 -0.7
584,005 + 15345 mRNA_6977 0.39 0.4
584,135 - 15345 mRNA_6977 0.62 0.1
584,245 + 15345 mRNA_6977 0.82 1.3
584,388 - 3.1
584,391 - 1.0
584,392 - 0.7
584,395 - -0.5
584,399 - -1.6
584,401 - 0.2
584,406 - 3.5
584,407 + 0.6
584,411 - 0.4
584,431 + -0.3
584,441 - 0.3
584,447 - -2.1
584,448 + -0.3
584,696 - 15346 mRNA_6978 0.17 0.8
584,721 + 15346 mRNA_6978 0.19 -0.3
584,724 - 15346 mRNA_6978 0.20 1.9
584,756 - 15346 mRNA_6978 0.22 -0.6
584,858 - 15346 mRNA_6978 0.31 0.6
584,896 + 15346 mRNA_6978 0.34 -0.8
585,158 + 15346 mRNA_6978 0.56 0.4
585,163 + 15346 mRNA_6978 0.56 1.0
585,415 - 15346 mRNA_6978 0.77 1.1
585,450 - 15346 mRNA_6978 0.80 0.7
585,726 - 0.2
585,861 - -0.1
585,874 - 0.1
585,880 + 0.2
585,888 - 1.6
585,890 + -1.1
585,913 + 0.6
585,916 + 0.1
585,917 + 1.0
585,932 + 0.4
586,034 + 0.2
586,054 - 0.7
586,054 + 0.2
586,066 + 2.6
586,188 - 0.4
586,198 + -0.4
586,199 - 1.6
586,204 - 0.2
586,213 + 0.4
586,218 - 0.7
586,224 - -0.6
586,228 + -0.5
586,230 - 2.5
586,353 - 1.9
586,355 - 0.4
586,361 - 1.0
586,364 + 1.8
586,377 + 1.0
586,378 + 0.6
586,382 + 0.7
586,655 + 15347 mRNA_6979 0.19 0.2
586,672 + 15347 mRNA_6979 0.20 0.9